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Publications

A culmination of rigorous research and innovative findings presented to the global scientific community. 

Embryonic Stem Cells
  • Bannerman BP, Oarga A, Júlvez J, Mycobacterial metabolic model development for drug target identification, Gigabyte, April, 2023 https://doi.org/10.46471/gigabyte.80

  • Oarga A, Bannerman BP, Júlvez J, CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities, Bioinformatics, Volume 39, Issue 2, February 2023, https://doi.org/10.1093/bioinformatics/btad053

  • Boeck L, Burbaud, S, Skwark M, Pearson WH, Sangen J, Weimann A, Everall. I, Bryant JM, Malhotra S, Bannerman BP, Kierdorf K, Blundell TL, Dionne MS, Parkhill JP, Floto RA ‘The Pathobiology of Mycobacterium Abscessus Revealed through Phenogenomic Analysis’. Sept 2022. Nature Microbiology doi: 10.1038/s41564-022-01204-x.

  • Bannerman, B. P, Jorge Júlvez, Alexandru Oarga, Tom L Blundell, Pablo Moreno, and R Andres Floto. ‘Integrated Human/SARS-CoV-2 Metabolic Models Present Novel Treatment Strategies against COVID-19’. Life Science Alliance 4, no. 10 (1 October 2021): e202000954. https://doi.org/10.26508/lsa.202000954.

  • Bryant JM, Brown KP, Burbaud S, Everall I, Belardinelli JM, Rodriguez-Rincon D, Grogono DM, Peterson CM, Verma D, Evans IE, Ruis C, Weimann A, Arora D, Malhotra S, Bannerman B, Passemar C, Templeton K, MacGregor G, Jiwa K, Fisher AJ, Blundell TL, Ordway DJ, Jackson M, Parkhill J, Floto RA. Stepwise pathogenic evolution of Mycobacterium abscessus. Science. 2021 Apr 30;372(6541):eabb8699. doi: 10.1126/science. abb8699. PMID: 33926925.

  • Londoño PA, Banholzer N, Bannerman BP, Kramer S. Is mRNA decapping by ApaH like phosphatases present in Eukaryotes beyond the Kinetoplastida. 2021. BMC Ecology and Evolution

  • Beaudoin CA, Jamasb AR, Alsulami AF, Copoiu L, van Tonder AJ, Hala S, Bannerman BP, Thomas SE, Vedithi SC, Torres PHM, Blundell TL. Predicted structural mimicry of spike receptor-binding motifs from highly pathogenic human coronaviruses. https://www.sciencedirect.com/science/article/pii/S2001037021002798

  • Alsulami AF, Thomas SE, Jamasb AR, Beaudoin CA, Moghul I, Bannerman BP, Copoiu L, Vedithi SC, Torres P, Blundell TL. SARS-CoV-2 3D database: understanding the coronavirus proteome and evaluating possible drug targets. Brief Bioinform. 2021 Mar 22;22(2):769-780. doi: 10.1093/bib/bbaa404. PMID: 33416848; PMCID: PMC7929435.

  • Oarga A, Bannerman BP, Júlvez J. Growth Dependent Computation of Chokepoints in Metabolic Networks. 2020 In book: Lecture Notes in Computer Science. DOI: 10.1007/978-3-030-60327-4_6.

  • Skwark M, Torres P, Copoiu L, Bannerman B P, Floto RA, Blundell TL. Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus, Database, Volume 2019, Issue 1, 2019

  • Bannerman BP, Vedithi, S, Julvez J, Munir A, Skwark M, Oliver S and Blundell, TL. Comparative pathway analysis of mycobacterial species provides insight into the identification of new drug targets, 2019. doi: https://doi.org/10.1101/535856

  • Waman, VP, Vedithi, SC, Thomas, SE, Bannerman BP, Munir, S, Skwark, MJ, Malhotra S and Blundell, TL. Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery. 2019. Emerging Microbes and Infections.

  • Bannerman B, Kramer S, Dorrell R, and Carrington M. Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism, 2018. PLOS ONE 13(3): e0192633.

  • Ismail, Dana, Jackie Green, Bridget Bannerman, et al. 2017. Posterior Reversible Encephalopathy Syndrome (PRES) in Adult Multi-Visceral Transplant Patients- Cambridge University Hospital Experience. Transplantation 101(6S2).

  • Bannerman B, Dorrell R, Chukualim J and Carrington M. 3D Eukaryotic Map: Intron Density vs Exon Junction Complex. F1000Research 2016, 5(ISCB Comm J):1982.

  • Gao, R., C. Kratzing, C. Pither… Bannerman-Chukualim et al. 2015. Nutritional Outcomes Following Small Bowel Transplantation – The First Year Post-Operative Nutritional Nadir. Clinical Nutrition ESPEN 10(5): e190–e191.

  • Middleton, S.J., C. Pither, R. Gao… Bannerman-Chukualim et al. 2014. Adult Small Intestinal and Multivisceral Transplantation: Lessons Through the “Retrospecto-Scope” at a Single UK Centre from 1991 to 2013. Transplantation Proceedings 46(6): 2114–2118.

  • Pither, C, S Duncan, A Butler… Bannerman-Chukualim et al. 2014. PTH-123 Quality of Life and performance status scores following intestinal transplantation are similar to those of patients on home parenteral nutrition in The UK. Gut 63 (Suppl 1Po): A265.

  • Shameer, S., Logan-Klumpler, F.J., Vinson, F., Cottret, L., Merlet, B., Achcar, F., Boshart, M., Berriman, M., Breitling, R., Bringaud, F., Bütikofer, P., Cattanach, A. M., Bannerman-Chukualim, B. P. et al. (2014) TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic Acids Res. 43: D637–D644.

  • Kramer, S., Bannerman-Chukualim, B., Ellis L., Boulden, E. A., Kelly, S, Field, M. C. and Carrington, M. Differential localization of the two Trypanosoma brucei Poly(A)-binding proteins to the nucleus and RNP granules suggests binding to distinct mRNA pools. PLOS ONE. 2012:

  • Pither, C, S Duncan, H Tincknell… Bannerman-Chukualim et al. 2012. PTU-150 Quality of Life before and after Intestinal Transplantation. Gut 61(Suppl2P): A246.

  • Wiles, A, Bredin F, Bannerman-Chukualim B, and Middleton, S. 2011. In the Treatment of Flares of Inflammatory Bowel Disease, Intravenous Hydrocortisone Causes Greater Falls in Blood Potassium and More Severe Episodes of Hypokalaemia than Methylprednisolone. Gut 60(Suppl 1): A223.

  • Pither C, Wiles A, Butler A… Bannerman-Chukualim et al. Quality of life in patients undergoing small intestinal transplantation. Gut 2011;60: A89

  • Wiles, A., Butler, A., Tincknell, H., Duncan, S., Bannerman-Chukualim, B., Gabe, S., . . . Middleton, S. (2010). Recent experience of adult small-intestinal and multi-visceral transplantation at Addenbrooke's Hospital, Cambridge University, UK. Proceedings of the Nutrition Society, 69(OCE7), E557.

  • Wiles, A., Butler, A., Tincknell, H., Duncan, S., Bannerman-Chukualim, B., Manaligod, M., . . . Middleton, S. (2010). The immediate post-operative period following intestinal and multivisceral transplant is marked by profound fluxes of sodium and fluid: The Cambridge experience. Proceedings of the Nutrition Society, 69(OCE7)

  • Jackson, A. P., Sanders, M., Berry, A., McQuillan, J., Aslett, M. A., Quail, M. A., Bannerman-Chukualim, B. P. et al. (2010) The genome sequence of Trypanosoma brucei gambiense, Causative agent of chronic Human African Trypanosomiasis. PLoS Negl. Trop. Dis. 4(4):

  • Bannerman-Chukualim, B., Peters, N., Fowler, C. H. and Berriman, M. (2008). TrypanoCyc – a metabolic pathway database for Trypanosoma brucei. BMC Bioinformatics. 9(10): 1–2.

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